Better error hanlding when parsing, added medical system
fixed grammar
This commit is contained in:
elvis
225
testing/medical.system
Normal file
225
testing/medical.system
Normal file
@ -0,0 +1,225 @@
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Environment: [
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eafib1 = (?[{},{afib},{}]?.eafib1 + ?[{afib},{},{}]?.ehr),
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ehr = (?[{},{heart_rate},{}]?.ehr + ?[{heart_rate},{},{}]?.ebb),
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ebb = ({}.ebb + e_cbb + e_nsbb + e_sbb),
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e_cbb = (?[{},{verapamil},{get_diltiazem}]?.empty
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+ ?[{},{diltiazem},{get_verapamil}]?.empty),
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e_nsbb = (?[{},{carvedilol},{get_propranolol}]?.empty
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+ ?[{},{propranolol},{get_carvedilol}]?.empty),
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e_sbb = (?[{},{atenolol},{get_bisoprolol}]?.empty
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+ ?[{},{bisoprolol},{get_atenolol}]?.empty),
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eafib2 = (?[{},{afib},{}]?.eafib2 + ?[{afib},{},{}]?.ehf),
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ehf = (?[{},{has_fib},{}]?.ehf + ?[{has_fib},{},{}]?.eflec),
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eflec = ({}.eflec + e_flec),
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e_flec = {get_flecainide}.empty,
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eafib3 = (?[{},{afib},{}]?.eafib3 + ?[{afib},{},{}]?.econs),
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econs = (?[{},{heart_rate,has_fib},{}]?.econs
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+ ?[{},{consensus_acei},{}]?.econs
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+ ?[{consensus_acei,heart_rate},{},{}]?.estroke
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+ ?[{consensus_acei,has_fib},{},{}]?.estroke),
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estroke = (?[{},{diseases,over75},{}]?.ewarf
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+ ?[{over75},{doac_fail,doac_int},{}]?.edoac
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+ ?[{diseases},{doac_fail,doac_int},{}]?.edoac
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+ ?[{over75,doac_fail},{},{}]?.evkant
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+ ?[{over75,doac_int},{},{}]?.evkant
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+ ?[{diseases,doac_fail},{},{}]?.evkant
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+ ?[{diseases,doac_int},{},{}]?.evkant),
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ewarf = ({}.ewarf + e_warf),
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e_warf = {get_warfarin}.empty,
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edoac = ({}.edoac + e_doac),
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e_doac = (?[{},{dabigatran},{get_apixaban}]?.e_doacfail
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+ ?[{},{apixaban},{get_dabigatran}]?.e_doacfail),
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e_doacfail = (?[{doac_fail},{},{stop_doac}]?.evkant
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+ ?[{},{doac_fail},{}]?.e_doacfail),
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evkant = ({}.evkant + e_vkant),
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e_vkant = {get_vkant}.empty,
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ghyper = (?[{},{hyper},{}]?.ghyper + ?[{hyper},{},{}]?.g1),
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g1 = (?[{diabete},{},{}]?.g2
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+ ?[{below55},{diabete,origin},{}]?.g2
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+ ?[{},{below55,diabete},{}]?.g3
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+ ?[{origin},{diabete},{}]?.g3),
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g2 = ({}.g2 + <1,e_acei>.g4 + <1,e_arb>.g5),
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g3 = ({}.g3 + <1,e_cbb>.g6),
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g4 = ({}.g4 + <1,e_cbb>.g7 + <1,e_td>.g8),
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g5 = ({}.g5 + <1,e_cbb>.g9 + <1,e_td>.g10),
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g6 = ({}.g6 + <1,e_acei>.g7 + <1,e_arb>.g9 + <1,e_td>.g11),
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g7 = ({}.g7 + <1,e_arb>.etd + <1,e_td>.earb),
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g8 = ({}.g8 + <1,e_arb>.ecbb + <1,e_cbb>.earb),
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g9 = ({}.g9 + <1,e_acei>.etd + <1,e_td>.eacei),
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g10 = ({}.g10 + <1,e_acei>.ecbb + <1,e_cbb>.eacei),
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g11 = ({}.g11 + <1,e_acei>.earb + <1,e_arb>.eacei),
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ecbb = ({}.ecbb + e_cbb),
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eacei = ({}.eacei + e_acei),
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e_acei = (?[{},{captopril},{get_benazepril}]?.empty
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+ ?[{},{benazepril},{get_captopril}]?.empty),
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earb = ({}.earb + e_arb),
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e_arb = (?[{},{irbesartan},{get_olmesortan}]?.empty
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+ ?[{},{olmesortan},{get_irbesartan}]?.empty),
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etd = ({}.etd + e_td),
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e_td = (?[{},{chlorothiazide},{get_indapamide}]?.empty
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+ ?[{},{indapamide},{get_chlorothiazide}]?.empty),
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k_doac = (?[{doac_test},{},{doac_ok}]?.empty
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+ ?[{doac_test},{},{doac_fail}]?.empty
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+ ?[{},{doac_test},{}]?.k_doac),
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empty = {}.empty,
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kafib = {afib}.empty,
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khf = {has_fib}.empty,
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khr = {heart_rate}.empty,
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kcons = {consensus_acei}.empty,
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kageA = {over75}.empty,
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kageB = {below55}.empty,
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kdiabete = {diabete}.empty,
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kdoacint = {doac_int}.empty,
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khyper = {hyper}.empty,
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korigin = {origin}.empty
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]
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Initial Entities: {}
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Context: [
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eafib1,
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eafib2,
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eafib3,
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ghyper,
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kafib,
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khf,
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empty,
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empty,
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empty,
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empty,
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empty,
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empty,
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khyper,
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empty,
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k_doac
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]
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Reactions: (
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[{hyper}, {}, {hyper}];
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[{afib}, {}, {afib}];
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[{has_fib}, {}, {has_fib}];
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[{heart_rate}, {}, {heart_rate}];
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[{consensus_acei}, {}, {consensus_acei}];
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[{over75}, {}, {over75}];
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[{below55}, {}, {below55}];
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[{diabete}, {}, {diabete}];
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[{origin}, {}, {origin}];
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[{doac_int}, {}, {doac_int}];
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[{doac}, {doac_ok,doac_fail}, {doac_test}];
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[{doac_ok}, {doac_fail}, {doac_ok}];
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[{doac_fail}, {doac_ok}, {doac_fail}];
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[{hyper}, {}, {diseases}];
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[{diabete}, {}, {diseases}];
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[{get_diltiazem}, {stop_cbb}, {diltiazem,cbb}];
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[{diltiazem}, {stop_cbb}, {diltiazem,cbb}];
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[{get_verapamil}, {stop_cbb}, {verapamil,cbb}];
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[{verapamil}, {stop_cbb}, {verapamil,cbb}];
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[{diltiazem,verapamil}, {stop_cbb}, {alert_dup}];
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[{get_propranolol}, {stop_nsbb}, {propranolol,nsbb}];
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[{propranolol}, {stop_nsbb}, {propranolol,nsbb}];
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[{get_carvedilol}, {stop_nsbb}, {carvedilol,nsbb}];
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[{carvedilol}, {stop_nsbb}, {carvedilol,nsbb}];
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[{propranolol,carvedilol}, {stop_nsbb}, {alert_dup}];
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[{get_bisoprolol}, {stop_sbb}, {bisoprolol,sbb}];
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[{bisoprolol}, {stop_sbb}, {bisoprolol,sbb}];
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[{get_atenolol}, {stop_sbb}, {atenolol,sbb}];
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[{atenolol}, {stop_sbb}, {atenolol,sbb}];
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[{bisoprolol,atenolol}, {stop_sbb}, {alert_dup}];
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[{get_flecainide}, {stop_flec}, {flecainide}];
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[{flecainide}, {stop_flec}, {flecainide}];
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[{get_warfarin}, {stop_warf}, {warfarin}];
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[{warfarin}, {stop_warf}, {warfarin}];
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[{get_apixaban}, {stop_doac}, {apixaban,doac}];
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[{apixaban}, {stop_doac}, {apixaban,doac}];
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[{get_dabigatran}, {stop_doac}, {dabigatran,doac}];
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[{dabigatran}, {stop_doac}, {dabigatran,doac}];
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[{apixaban,dabigatran}, {stop_doac}, {alert_dup}];
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[{get_vkant}, {stop_vkant}, {vkant}];
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[{vkant}, {stop_vkant}, {vkant}];
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[{get_benazepril}, {stop_acei}, {benazepril,acei}];
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[{benazepril}, {stop_acei}, {benazepril,acei}];
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[{get_captopril}, {stop_acei}, {captopril,acei}];
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[{captopril}, {stop_acei}, {captopril,acei}];
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[{benazepril,captopril}, {stop_acei}, {alert_dup}];
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[{get_olmesortan}, {stop_arb}, {olmesortan,arb}];
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[{olmesortan}, {stop_arb}, {olmesortan,arb}];
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[{get_irbesartan}, {stop_arb}, {irbesartan,arb}];
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[{irbesartan}, {stop_arb}, {irbesartan,arb}];
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[{olmesortan,irbesartan}, {stop_arb}, {alert_dup}];
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[{get_indapamide}, {stop_td}, {indapamide,td}];
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[{indapamide}, {stop_td}, {indapamide,td}];
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[{get_chlorothiazide}, {stop_td}, {chlorothiazide,td}];
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[{chlorothiazide}, {stop_td}, {chlorothiazide,td}];
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[{indapamide,chlorothiazide}, {stop_td}, {alert_dup}];
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[{doac,doac_fail}, {stop_doac}, {doac_danger}];
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[{doac,doac_danger}, {stop_doac}, {danger}];
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[{get_apixaban,get_diltiazem}, {}, {moderate}];
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[{get_apixaban,diltiazem}, {}, {moderate}];
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[{apixaban,get_diltiazem}, {}, {moderate}];
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[{apixaban,diltiazem}, {}, {moderate}];
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[{get_apixaban,get_verapamil}, {}, {moderate}];
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[{get_apixaban,verapamil}, {}, {moderate}];
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[{apixaban,get_verapamil}, {}, {moderate}];
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[{apixaban,verapamil}, {}, {moderate}];
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[{get_dabigatran,get_diltiazem}, {}, {moderate}];
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[{get_dabigatran,diltiazem}, {}, {moderate}];
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[{dabigatran,get_diltiazem}, {}, {moderate}];
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[{dabigatran,diltiazem}, {}, {moderate}];
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[{get_dabigatran,get_verapamil}, {}, {major}];
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[{get_dabigatran,verapamil}, {}, {major}];
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[{dabigatran,get_verapamil}, {}, {major}];
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[{dabigatran,verapamil}, {}, {major}];
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[{get_dabigatran,get_carvedilol}, {}, {moderate}];
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[{get_dabigatran,carvedilol}, {}, {moderate}];
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[{dabigatran,get_carvedilol}, {}, {moderate}];
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[{dabigatran,carvedilol}, {}, {moderate}];
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[{get_warfarin,get_benazepril}, {}, {minor}];
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[{get_warfarin,benazepril}, {}, {minor}];
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[{warfarin,get_benazepril}, {}, {minor}];
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[{warfarin,benazepril}, {}, {minor}];
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[{get_warfarin,get_indapamide}, {}, {minor}];
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[{get_warfarin,indapamide}, {}, {minor}];
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[{warfarin,get_indapamide}, {}, {minor}];
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[{warfarin,indapamide}, {}, {minor}];
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[{get_warfarin,get_chlorothiazide}, {}, {minor}];
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[{get_warfarin,chlorothiazide}, {}, {minor}];
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[{warfarin,get_chlorothiazide}, {}, {minor}];
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[{warfarin,chlorothiazide}, {}, {minor}];
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[{get_warfarin,get_propranolol}, {}, {minor}];
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[{get_warfarin,propranolol}, {}, {minor}];
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[{warfarin,get_propranolol}, {}, {minor}];
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[{warfarin,propranolol}, {}, {minor}];
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[{get_flecainide,get_diltiazem}, {}, {major}];
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[{get_flecainide,diltiazem}, {}, {major}];
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[{flecainide,get_diltiazem}, {}, {major}];
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[{flecainide,diltiazem}, {}, {major}];
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[{get_flecainide,get_verapamil}, {}, {major}];
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[{get_flecainide,verapamil}, {}, {major}];
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[{flecainide,get_verapamil}, {}, {major}];
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[{flecainide,verapamil}, {}, {major}];
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[{get_flecainide,get_bisoprolol}, {}, {moderate}];
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[{get_flecainide,bisoprolol}, {}, {moderate}];
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[{flecainide,get_bisoprolol}, {}, {moderate}];
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[{flecainide,bisoprolol}, {}, {moderate}];
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[{get_flecainide,get_atenolol}, {}, {moderate}];
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[{get_flecainide,atenolol}, {}, {moderate}];
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[{flecainide,get_atenolol}, {}, {moderate}];
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[{flecainide,atenolol}, {}, {moderate}];
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[{get_flecainide,get_propranolol}, {}, {moderate}];
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[{get_flecainide,propranolol}, {}, {moderate}];
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[{flecainide,get_propranolol}, {}, {moderate}];
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[{flecainide,propranolol}, {}, {moderate}];
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[{get_flecainide,get_carvedilol}, {}, {moderate}];
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[{get_flecainide,carvedilol}, {}, {moderate}];
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[{flecainide,get_carvedilol}, {}, {moderate}];
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[{flecainide,carvedilol}, {}, {moderate}];
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[{major}, {}, {major}];
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[{moderate}, {}, {moderate}];
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[{minor}, {}, {minor}];
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[{alert_dup}, {}, {alert_dup}];
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[{danger},{},{danger}]
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)
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Digraph > Dot
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| Hide
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| Hide
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| ! "white"
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| ! "black"
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> Save("out.dot")
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