diff --git a/Makefile b/Thesis/Makefile similarity index 100% rename from Makefile rename to Thesis/Makefile diff --git a/appendix.tex b/Thesis/appendix.tex similarity index 100% rename from appendix.tex rename to Thesis/appendix.tex diff --git a/background.tex b/Thesis/background.tex similarity index 100% rename from background.tex rename to Thesis/background.tex diff --git a/conclusion.tex b/Thesis/conclusion.tex similarity index 100% rename from conclusion.tex rename to Thesis/conclusion.tex diff --git a/design.tex b/Thesis/design.tex similarity index 100% rename from design.tex rename to Thesis/design.tex diff --git a/development.tex b/Thesis/development.tex similarity index 100% rename from development.tex rename to Thesis/development.tex diff --git a/document.bib b/Thesis/document.bib similarity index 100% rename from document.bib rename to Thesis/document.bib diff --git a/document.tex b/Thesis/document.tex similarity index 100% rename from document.tex rename to Thesis/document.tex diff --git a/figures/bifurcated.pdf b/Thesis/figures/bifurcated.pdf similarity index 100% rename from figures/bifurcated.pdf rename to Thesis/figures/bifurcated.pdf diff --git a/figures/bifurcated.svg b/Thesis/figures/bifurcated.svg similarity index 100% rename from figures/bifurcated.svg rename to Thesis/figures/bifurcated.svg diff --git a/figures/bifurcated_gui.png b/Thesis/figures/bifurcated_gui.png similarity index 100% rename from figures/bifurcated_gui.png rename to Thesis/figures/bifurcated_gui.png diff --git a/figures/cherubino.eps b/Thesis/figures/cherubino.eps similarity index 100% rename from figures/cherubino.eps rename to Thesis/figures/cherubino.eps diff --git a/figures/flamegraph_mex10.pdf b/Thesis/figures/flamegraph_mex10.pdf similarity index 100% rename from figures/flamegraph_mex10.pdf rename to Thesis/figures/flamegraph_mex10.pdf diff --git a/figures/flamegraph_mex10.svg b/Thesis/figures/flamegraph_mex10.svg similarity index 100% rename from figures/flamegraph_mex10.svg rename to Thesis/figures/flamegraph_mex10.svg diff --git a/figures/flamegraph_mex5.pdf b/Thesis/figures/flamegraph_mex5.pdf similarity index 100% rename from figures/flamegraph_mex5.pdf rename to Thesis/figures/flamegraph_mex5.pdf diff --git a/figures/flamegraph_mex5.svg b/Thesis/figures/flamegraph_mex5.svg similarity index 100% rename from figures/flamegraph_mex5.svg rename to Thesis/figures/flamegraph_mex5.svg diff --git a/figures/reaction_system.pdf b/Thesis/figures/reaction_system.pdf similarity index 100% rename from figures/reaction_system.pdf rename to Thesis/figures/reaction_system.pdf diff --git a/figures/reaction_system.pdf_tex b/Thesis/figures/reaction_system.pdf_tex similarity index 100% rename from figures/reaction_system.pdf_tex rename to Thesis/figures/reaction_system.pdf_tex diff --git a/figures/reaction_system.svg b/Thesis/figures/reaction_system.svg similarity index 100% rename from figures/reaction_system.svg rename to Thesis/figures/reaction_system.svg diff --git a/figures/straight.pdf b/Thesis/figures/straight.pdf similarity index 100% rename from figures/straight.pdf rename to Thesis/figures/straight.pdf diff --git a/figures/straight.svg b/Thesis/figures/straight.svg similarity index 100% rename from figures/straight.svg rename to Thesis/figures/straight.svg diff --git a/figures/straight_gui.png b/Thesis/figures/straight_gui.png similarity index 100% rename from figures/straight_gui.png rename to Thesis/figures/straight_gui.png diff --git a/figures/target_system.pdf b/Thesis/figures/target_system.pdf similarity index 100% rename from figures/target_system.pdf rename to Thesis/figures/target_system.pdf diff --git a/figures/target_system.svg b/Thesis/figures/target_system.svg similarity index 100% rename from figures/target_system.svg rename to Thesis/figures/target_system.svg diff --git a/introduction.tex b/Thesis/introduction.tex similarity index 100% rename from introduction.tex rename to Thesis/introduction.tex diff --git a/title_page.tex b/Thesis/title_page.tex similarity index 100% rename from title_page.tex rename to Thesis/title_page.tex diff --git a/validation.tex b/Thesis/validation.tex similarity index 100% rename from validation.tex rename to Thesis/validation.tex diff --git a/document.pdf b/document.pdf deleted file mode 100644 index 0520969..0000000 Binary files a/document.pdf and /dev/null differ