275 lines
8.7 KiB
BibTeX
275 lines
8.7 KiB
BibTeX
@article{Brodo_Bruni_Falaschi_2021,
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title = {A logical and graphical framework for Reaction
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Systems},
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volume = 875,
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DOI = {10.1016/j.tcs.2021.03.024},
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journal = {Theoretical Computer Science},
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author = {Brodo, Linda and Bruni, Roberto and Falaschi,
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Moreno},
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year = 2021,
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month = 7,
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pages = {1–27}
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}
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@article{Rozenberg_Engelfriet_1998,
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title = {Elementary Net Systems},
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DOI = {10.1007/3-540-65306-6_14},
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journal = {Lecture Notes in Computer Science},
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author = {Rozenberg, Grzegorz and Engelfriet, Joost},
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year = 1998,
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pages = {12–121}
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}
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@book{Baier_Katoen_Larsen_2016,
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place = {Cumberland},
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title = {Principles of model checking},
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publisher = {MIT Press, The},
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author = {Baier, Christel and Katoen, Joost-Pieter and Larsen,
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Kim Guldstrand},
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year = 2016
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}
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@article{Aceto_Ingolfsdottir_Srba_2011,
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title = {The algorithmics of Bisimilarity},
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DOI = {10.1017/cbo9780511792588.004},
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journal = {Advanced Topics in Bisimulation and Coinduction},
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author = {Aceto, Luca and Ingolfsdottir, Anna and Srba, Jirí},
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year = 2011,
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month = 9,
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pages = {100–172}
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}
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@article{Cleaveland_Sokolsky_2001,
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title = {Equivalence and preorder checking for finite-state
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systems},
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DOI = {10.1016/b978-044482830-9/50024-2},
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journal = {Handbook of Process Algebra},
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author = {Cleaveland, Rance and Sokolsky, Oleg},
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year = 2001,
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pages = {391–424}
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}
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@article{Paige_Tarjan_1987,
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title = {Three partition refinement algorithms},
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volume = 16,
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DOI = {10.1137/0216062},
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number = 6,
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journal = {SIAM Journal on Computing},
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author = {Paige, Robert and Tarjan, Robert E.},
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year = 1987,
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month = 12,
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pages = {973–989}
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}
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@Online{rust_2025,
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accessed = {2025-09-14},
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author = {The Rust teams},
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title = {Rust Programming Language},
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url = {https://rust-lang.org/}
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}
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@report{WebAssemblyCoreSpecification2,
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title = {{WebAssembly Core Specification}},
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version = {2.0},
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editor = {Rossberg, Andreas},
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date = {2025-09-14},
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institution = {{W3C}},
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url = {https://www.w3.org/TR/wasm-core-2/},
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langid = {english},
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}
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@software {Burgener2025,
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author = {Daniel Burgener},
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title = {{lalrpop}: convenient LR(1) parser generator},
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url = {https://github.com/lalrpop/lalrpop},
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date = {2025-05-22},
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version = {0.22.2},
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license = {Apache-2.0 OR MIT},
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}
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@software {Borgna2025,
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author = {Agustín Borgna},
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title = {{petgraph}: Graph data structure library. Provides
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graph types and graph algorithms.},
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url = {https://github.com/petgraph/petgraph},
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date = {2025-09-30},
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version = {0.8.3},
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license = {MIT OR Apache-2.0},
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}
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@Online{graphviz_2025,
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accessed = {2025-09-14},
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title = {Graphviz is open source graph visualization
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software.},
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author = {Ellson, John},
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url = {https://graphviz.org/doc/info/lang.html},
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}
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@Online{graphml_2025,
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accessed = {2025-09-14},
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title = {GraphML is a comprehensive and easy-to-use file
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format for graphs.},
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author = {The GraphML Team},
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url = {http://graphml.graphdrawing.org/},
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}
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@software {egui_node_graph22024,
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author = {trevyn},
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title = {{egui\_node\_graph2}: A helper library to create
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interactive node graphs using egui},
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url = {https://github.com/trevyn/egui_node_graph2},
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date = {2024-11-03},
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version = {0.7.0},
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license = {MIT},
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}
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@software {Ernerfeldt2025,
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author = {Emil Ernerfeldt},
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title = {{egui}: An easy-to-use immediate mode GUI that runs
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on both web and native},
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url = {https://github.com/emilk/egui},
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date = {2025-11-13},
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version = {0.33.2},
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license = {MIT OR Apache-2.0},
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}
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@Online{btree_2025,
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accessed = {2025-09-14},
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title = {An ordered set based on a B-Tree.},
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author = {The Rust teams},
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url = {https://doc.rust-lang.org/std/collections/struct.BTreeSet.html},
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}
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@Online{arc_2025,
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accessed = {2025-09-14},
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title = {A thread-safe reference-counting pointer. ‘Arc’
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stands for ‘Atomically Reference Counted’.},
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author = {The Rust teams},
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url = {https://doc.rust-lang.org/std/sync/struct.Arc.html},
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}
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@software {Rotem2025,
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author = {Nadav Rotem},
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title = {{layout-rs}: A graph visualization program},
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url = {https://github.com/nadavrot/layout},
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date = {2025-04-24},
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version = {0.1.3},
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license = {MIT},
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}
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@software {Stampfl2025,
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author = {Laurenz Stampfl},
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title = {{resvg}: An SVG rendering library.},
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url = {https://github.com/linebender/resvg},
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date = {2025-04-17},
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version = {0.45.1},
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license = {Apache-2.0 OR MIT},
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}
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@software {wasm-bindgen2025,
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author = {daxpedda},
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title = {{wasm-bindgen}: Easy support for interacting between
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JS and Rust.},
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url = {https://github.com/wasm-bindgen/wasm-bindgen},
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date = {2025-10-27},
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version = {0.2.105},
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license = {MIT OR Apache-2.0},
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}
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@Software{binaryen_2025,
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title = {{binaryen}: a compiler and toolchain infrastructure
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library for WebAssembly, written in C++.},
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date = {2025-10-27},
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url = {https://github.com/WebAssembly/binaryen},
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}
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@Manual{manualperf_2025,
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title = {perf(1) — Linux manual page},
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edition = {6.17-2},
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month = 11,
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year = 2025,
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}
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@software {Ochtman2025,
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author = {Dirkjan Ochtman},
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title = {{flamegraph}: A simple cargo subcommand for generating flamegraphs, using inferno under the hood},
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url = {https://github.com/flamegraph-rs/flamegraph},
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date = {2025-11-07},
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version = {0.6.10},
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license = {MIT OR Apache-2.0},
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}
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@article{Brodo_Bruni_Falaschi_Gori_Milazzo_2025,
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title = {Slicing analyses for negative dependencies in
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Reaction Systems Modeling Gene Regulatory Networks},
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DOI = {10.1007/s11047-025-10046-5},
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journal = {Natural Computing},
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author = {Brodo, Linda and Bruni, Roberto and Falaschi, Moreno
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and Gori, Roberta and Milazzo, Paolo},
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year = 2025,
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month = 9
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}
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@article{Mitrana_Păun_Petre_Prelipcean_2025,
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title = {Quantitative reaction systems},
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DOI = {10.1109/iraset64571.2025.11008263},
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journal = {2025 5th International Conference on Innovative
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Research in Applied Science, Engineering and
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Technology (IRASET)},
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author = {Mitrana, Victor and Păun, Mihaela and Petre, Ion and
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Prelipcean, Ana-Maria},
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year = 2025,
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month = 5,
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pages = {1–6}
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}
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@article{Bottoni_Mitrana_Petre_2025,
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title = {Multiset Reaction Systems},
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DOI = {10.1007/978-3-031-97274-4_11},
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journal = {Lecture Notes in Computer Science},
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author = {Bottoni, Paolo and Mitrana, Victor and Petre, Ion},
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year = 2025,
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pages = {179–193}
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}
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@Misc{ReactionSystemsGit,
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author = {Rossi, Elvis},
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title = {ReactionSystems},
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publisher = {GitHub},
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journal = {GitHub repository},
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howpublished = {\url{https://github.com/elvisrossi/ReactionSystems}},
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year = 2025,
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}
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@Misc{ReactionSystemsGUIGit,
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author = {Rossi, Elvis},
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title = {ReactionSystems},
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publisher = {GitHub},
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journal = {GitHub repository},
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howpublished =
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{\url{https://github.com/elvisrossi/ReactionSystemsGUI}},
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year = 2025,
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}
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@Misc{BioResolve2025,
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title = {BioResolve web page, a Prolog interpreter for
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Reaction Systems analysis.},
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howpublished = {\url{https://pages.di.unipi.it/bruni/LTSRS/}},
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year = 2025,
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}
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@article{Brodo_Bruni_Falaschi_Gori_Milazzo_Montagna_Pulieri_2024,
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title = {Causal analysis of positive reaction systems},
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volume = 26,
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DOI = {10.1007/s10009-024-00757-y},
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number = 4,
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journal = {International Journal on Software Tools for
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Technology Transfer},
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author = {Brodo, Linda and Bruni, Roberto and Falaschi, Moreno
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and Gori, Roberta and Milazzo, Paolo and Montagna,
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Valeria and Pulieri, Pasquale},
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year = 2024,
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month = {6},
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pages = {509–526}
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}
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