Version two of assert, now with parser
This commit is contained in:
@ -1,5 +1,8 @@
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#![allow(dead_code)]
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// If changing IntegerType in assert.rs, also change from Num to another
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// similar parser with different return type in grammar.lalrpop in
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// AssertExpression
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type IntegerType = i64;
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#[derive(Debug, Clone)]
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@ -10,126 +13,65 @@ pub struct RSassert {
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#[derive(Debug, Clone)]
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pub enum Tree {
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Concat(Box<Tree>, Box<Tree>),
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If(Box<Boolean>, Box<Tree>),
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IfElse(Box<Boolean>, Box<Tree>, Box<Tree>),
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Assignment(AssignmentVar, Box<Expression>),
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If(Box<Expression>, Box<Tree>),
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IfElse(Box<Expression>, Box<Tree>, Box<Tree>),
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Assignment(AssignmentVariable, Box<Expression>),
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Return(Box<Expression>),
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For(Variable, Range, Box<Tree>),
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}
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#[derive(Debug, Clone)]
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pub enum Expression {
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B(Boolean),
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A(Arithmetic),
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Lab(Label),
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Set(Set),
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El(Element),
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Str(Str),
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pub struct Variable {
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data: String,
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}
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Var(Variable), // for when the type should just be passed through
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impl Variable {
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pub fn from(data: String) -> Self {
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Self { data }
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}
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}
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#[derive(Debug, Clone)]
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pub enum Boolean {
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Var(Variable), // should be of type boolean
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pub enum AssignmentVariable {
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Var(Variable),
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QualifiedVar(Variable, QualifierRestricted)
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}
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#[derive(Debug, Clone)]
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pub enum Expression {
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True,
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False,
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Not(Box<Boolean>),
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And(Box<Boolean>, Box<Boolean>),
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Or(Box<Boolean>, Box<Boolean>),
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Xor(Box<Boolean>, Box<Boolean>),
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Less(Arithmetic, Arithmetic),
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LessEq(Arithmetic, Arithmetic),
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More(Arithmetic, Arithmetic),
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MoreEq(Arithmetic, Arithmetic),
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Eq(Arithmetic, Arithmetic),
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NotEq(Arithmetic, Arithmetic),
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LabelEq(Label, Label),
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LabelNotEq(Label, Label),
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SetSub(Set, Set),
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SetSubEq(Set, Set),
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SetSuper(Set, Set),
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SetSuperEq(Set, Set),
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SetEq(Set, Set),
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SetEmpty(Set),
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ElEq(Element, Element),
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ElNotEq(Element, Element),
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StrEq(Str, Str),
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StrNotEq(Str, Str),
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StrSubstring(Str, Str),
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}
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#[derive(Debug, Clone)]
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pub enum Arithmetic {
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Var(Variable), // should be of type arithmetic
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Integer(IntegerType),
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Plus(Box<Arithmetic>, Box<Arithmetic>),
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Minus(Box<Arithmetic>, Box<Arithmetic>),
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Times(Box<Arithmetic>, Box<Arithmetic>),
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Quotient(Box<Arithmetic>, Box<Arithmetic>),
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Reminder(Box<Arithmetic>, Box<Arithmetic>),
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Exponential(Box<Arithmetic>, Box<Arithmetic>),
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Rand(Box<Arithmetic>, Box<Arithmetic>),
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Min(Box<Arithmetic>, Box<Arithmetic>),
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Max(Box<Arithmetic>, Box<Arithmetic>),
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Label(Box<super::structure::RSlabel>),
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Set(super::structure::RSset),
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Element(super::translator::IdType),
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String(String),
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Var(AssignmentVariable),
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SetLength(Set),
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StrLength(Str),
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Unary(Unary, Box<Expression>),
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Binary(Binary, Box<Expression>, Box<Expression>),
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}
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#[derive(Debug, Clone)]
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pub enum Label {
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Var(Variable), // should be of type label
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Literal(Box<super::structure::RSlabel>),
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}
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#[derive(Debug, Clone)]
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pub enum Set {
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Var(Variable), // should be of type set
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Literal(super::structure::RSset),
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Append(Box<Set>, Element),
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Union(Box<Set>, Box<Set>),
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Intersection(Box<Set>, Box<Set>),
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Difference(Box<Set>, Box<Set>),
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SimmetricDifference(Box<Set>, Box<Set>),
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ValueOfLabel(Label, Qualifier),
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}
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#[derive(Debug, Clone)]
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pub enum Element {
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Var(Variable), // should be of type element
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Literal(super::translator::IdType),
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}
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#[derive(Debug, Clone)]
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pub enum Str {
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Var(Variable), // should be of type string
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Literal(String),
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Concat(Box<Str>, Box<Str>),
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ArithmeticToString(Box<Arithmetic>),
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BooleanToString(Box<Boolean>),
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ElementToString(Element),
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CommonSubstring(Box<Str>, Box<Str>),
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}
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#[derive(Debug, Clone)]
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pub enum AssignmentVar {
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Var(Variable),
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ValueOfVariable(Variable, QualifierAssignment),
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}
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#[derive(Debug, Clone)]
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pub struct Variable {
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name: String,
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pub enum Range {
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IterateOverSet(Box<Expression>),
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IterateInRange(Box<Expression>, Box<Expression>),
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}
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#[derive(Debug, Clone, Copy)]
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pub enum QualifierAssignment {
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pub enum Unary {
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Not,
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Rand,
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Empty,
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Length,
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ToStr,
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Qualifier(Qualifier)
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}
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#[derive(Debug, Clone, Copy)]
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pub enum QualifierRestricted {
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Entities,
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Context,
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Reactants,
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@ -141,23 +83,33 @@ pub enum QualifierAssignment {
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#[derive(Debug, Clone, Copy)]
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pub enum Qualifier {
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Entities,
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Context,
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AvailableEntities,
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Reactants,
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ReactantsAbsent,
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AllReactants,
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Inhibitors,
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InhibitorsPresent,
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AllInhibitors,
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Products,
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Restricted(QualifierRestricted),
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}
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#[derive(Debug, Clone)]
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pub enum Range {
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IterateOverSet(Set),
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IterateInRange(Box<Arithmetic>, Box<Arithmetic>),
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#[derive(Debug, Clone, Copy)]
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pub enum Binary {
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And,
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Or,
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Xor,
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Less,
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LessEq,
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More,
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MoreEq,
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Eq,
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NotEq,
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Plus,
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Minus,
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Times,
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Exponential,
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Quotient,
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Reminder,
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Concat,
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SubStr,
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Min,
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Max,
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CommonSubStr,
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}
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@ -5,7 +5,9 @@ use crate::rsprocess::structure::{RSset,
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RSprocess,
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RSenvironment,
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RSsystem,
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RSlabel,
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RSreaction};
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use crate::rsprocess::structure::assert;
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use crate::rsprocess::translator::{Translator, IdType};
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use crate::rsprocess::presets::Instructions;
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use crate::rsprocess::presets;
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@ -120,6 +122,7 @@ Reaction: RSreaction = {
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RSreaction::from(r, i, p),
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}
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// -----------------------------------------------------------------------------
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// ContextParser
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// -----------------------------------------------------------------------------
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@ -152,6 +155,7 @@ CTX_process: RSprocess = {
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}
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};
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// -----------------------------------------------------------------------------
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// EnvironmentParser
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// -----------------------------------------------------------------------------
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@ -165,28 +169,154 @@ Env_term: (IdType, RSprocess) = {
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(translator.encode(identifier), k)
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};
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// -----------------------------------------------------------------------------
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// AssertParser
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// -----------------------------------------------------------------------------
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// pub Assert: Box<RSassert> = {
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// <f: Formula_Assert> => Box::new(f)
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// };
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pub Assert: Box<assert::RSassert> = {
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"fn" "{" <f: AssertTree> "}" =>
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Box::new(assert::RSassert{tree: f}),
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};
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AssertTree: assert::Tree = {
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<t1: AssertTree2> ";" <t2: AssertTree> =>
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assert::Tree::Concat(Box::new(t1), Box::new(t2)),
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<t: AssertTree2> => t,
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}
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AssertTree2: assert::Tree = {
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"if" <e: AssertExpression>
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"then" "{" <t: AssertTree> "}" =>
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assert::Tree::If(Box::new(e), Box::new(t)),
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"if" <e: AssertExpression>
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"then" "{" <t1: AssertTree> "}"
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"else" "{" <t2: AssertTree> "}" =>
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assert::Tree::IfElse(Box::new(e), Box::new(t1), Box::new(t2)),
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"let" <v: AssertAssignmentVar> "=" <e: AssertExpression> =>
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assert::Tree::Assignment(v, Box::new(e)),
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"return" <e: AssertExpression> =>
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assert::Tree::Return(Box::new(e)),
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"for" <v: AssertVariable> "in" <r: AssertRange> "{" <t: AssertTree> "}" =>
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assert::Tree::For(v, r, Box::new(t)),
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}
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AssertAssignmentVar: assert::AssignmentVariable = {
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<v: AssertVariable> => assert::AssignmentVariable::Var(v),
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<v: AssertVariable> "." <q: AssertQualifierRestricted> =>
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assert::AssignmentVariable::QualifiedVar(v, q),
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}
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AssertVariable: assert::Variable = {
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<v: Literal> => assert::Variable::from(v)
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}
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AssertExpression: assert::Expression = {
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"(" <e: AssertExpression> ")" => e,
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"True" => assert::Expression::True,
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"False" => assert::Expression::False,
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// If changing IntegerType in assert.rs, also change from Num to another
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// similar parser with different return type
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<i: Num> => assert::Expression::Integer(i),
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<lab: AssertLabel> => assert::Expression::Label(Box::new(lab)),
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<set: Set_of_entities> => assert::Expression::Set(set),
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"'" <el: Literal> "'" => assert::Expression::Element(translator.encode(el)),
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// strings
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PATH => assert::Expression::String(<>.trim_end_matches("\"")
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.trim_start_matches("\"")
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.to_string()),
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<unp: AssertUnaryPrefix> <e: AssertExpression> =>
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assert::Expression::Unary(unp, Box::new(e)),
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"(" <e: AssertExpression> ")" <uns: AssertUnarySuffix> =>
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assert::Expression::Unary(uns, Box::new(e)),
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"(" <e1: AssertExpression> <b: AssertBinary> <e2: AssertExpression> ")" =>
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assert::Expression::Binary(b, Box::new(e1), Box::new(e2)),
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<b: AssertBinaryPrefix>
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"(" <e1: AssertExpression> "," <e2: AssertExpression> ")" =>
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assert::Expression::Binary(b, Box::new(e1), Box::new(e2)),
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}
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AssertUnaryPrefix: assert::Unary = {
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"not" => assert::Unary::Not,
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"rand" => assert::Unary::Rand,
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}
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AssertUnarySuffix: assert::Unary = {
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".empty" => assert::Unary::Empty,
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".length" => assert::Unary::Length,
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".tostr" => assert::Unary::ToStr,
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"." <q: AssertQualifier> => assert::Unary::Qualifier(q),
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}
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AssertBinary: assert::Binary = {
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"&&" => assert::Binary::And,
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"||" => assert::Binary::Or,
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"^^" => assert::Binary::Xor,
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"<" => assert::Binary::Less,
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"<=" => assert::Binary::LessEq,
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">" => assert::Binary::More,
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">=" => assert::Binary::MoreEq,
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"==" => assert::Binary::Eq,
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"!=" => assert::Binary::NotEq,
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"+" => assert::Binary::Plus,
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"-" => assert::Binary::Minus,
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"*" => assert::Binary::Times,
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"^" => assert::Binary::Exponential,
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"/" => assert::Binary::Quotient,
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"%" => assert::Binary::Reminder,
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"::" => assert::Binary::Concat,
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}
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AssertBinaryPrefix: assert::Binary = {
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"substr" => assert::Binary::SubStr,
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"min" => assert::Binary::Min,
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"max" => assert::Binary::Max,
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"commonsubstr" => assert::Binary::CommonSubStr,
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}
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AssertQualifier: assert::Qualifier = {
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"AvailableEntities" => assert::Qualifier::AvailableEntities,
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"AllReactants" => assert::Qualifier::AllReactants,
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"AllInhibitors" => assert::Qualifier::AllInhibitors,
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<q: AssertQualifierRestricted> => assert::Qualifier::Restricted(q),
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}
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AssertQualifierRestricted: assert::QualifierRestricted = {
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"Entities" => assert::QualifierRestricted::Entities,
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"Context" => assert::QualifierRestricted::Context,
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"Reactants" => assert::QualifierRestricted::Reactants,
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"ReactantsAbsent" => assert::QualifierRestricted::ReactantsAbsent,
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"Inhibitors" => assert::QualifierRestricted::Inhibitors,
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"InhibitorsPresent" => assert::QualifierRestricted::InhibitorsPresent,
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"Products" => assert::QualifierRestricted::Products,
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}
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AssertLabel: RSlabel = {
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"["
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"Entities" ":" <e: Set_of_entities> ","
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"Context" ":" <c: Set_of_entities> ","
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"Reactants" ":" <r: Set_of_entities> ","
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"ReactantsAbsent" ":" <r_a: Set_of_entities> ","
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"Inhibitors" ":" <i: Set_of_entities> ","
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"InhibitorsPresent" ":" <i_p: Set_of_entities> ","
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"Products" ":" <p: Set_of_entities> ","
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"]" => RSlabel::create(e, c, r, r_a, i, i_p, p)
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}
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AssertRange: assert::Range = {
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"{" <e: AssertExpression> "}" => assert::Range::IterateOverSet(Box::new(e)),
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"{" <e1: AssertExpression> ".." <e2: AssertExpression> "}" =>
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assert::Range::IterateInRange(Box::new(e1), Box::new(e2)),
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}
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// Formula_Assert: RSassert = {
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// "-" <f: Formula_Assert> => RSassert::Not(Box::new(f)),
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// "(" <f1: Formula_Assert> "^" <f2: Formula_Assert> ")" =>
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// RSassert::Xor(Box::new(f1), Box::new(f2)),
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// "(" <f: Separated<Formula_Assert, "\\/">> ")" => RSassert::Or(f),
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// "(" <f: Separated<Formula_Assert, "/\\">> ")" => RSassert::And(f),
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// <c: Set_of_entities> "inW" => RSassert::Sub(c, RSassertOp::InW),
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// <c: Set_of_entities> "inR" => RSassert::Sub(c, RSassertOp::InR),
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// <c: Set_of_entities> "inI" => RSassert::Sub(c, RSassertOp::InI),
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// <c: Set_of_entities> "inP" => RSassert::Sub(c, RSassertOp::InP),
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// "?" "inW" => RSassert::NonEmpty(RSassertOp::InW),
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// "?" "inR" => RSassert::NonEmpty(RSassertOp::InR),
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// "?" "inI" => RSassert::NonEmpty(RSassertOp::InI),
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// "?" "inP" => RSassert::NonEmpty(RSassertOp::InP),
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// };
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// -----------------------------------------------------------------------------
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// BHMLParser
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@ -272,7 +402,9 @@ LiteralSeparatorNode: graph::NodeDisplayBase = {
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LiteralSeparatorEdge: graph::EdgeDisplayBase = {
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PATH =>
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graph::EdgeDisplayBase::String {
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string: <>.trim_end_matches("\"").trim_start_matches("\"").to_string()
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string: <>.trim_end_matches("\"")
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.trim_start_matches("\"")
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.to_string()
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}
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};
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@ -551,6 +551,28 @@ impl RSlabel {
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}
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}
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#[allow(clippy::too_many_arguments)]
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pub fn create(
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available_entities: RSset,
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context: RSset,
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reactants: RSset,
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reactants_absent: RSset,
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inhibitors: RSset,
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inhibitors_present: RSset,
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products: RSset,
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) -> Self {
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RSlabel {
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available_entities: available_entities.clone(),
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context: context.clone(),
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t: available_entities.union(&context),
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reactants,
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reactants_absent,
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inhibitors,
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inhibitors_present,
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products,
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}
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}
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pub fn get_context(&self) -> (&RSset, &RSset, &RSset) {
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(
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&self.available_entities,
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